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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80351328_80351661_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80351328 - 80351661
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATGC
Flanking Amino Acid:
YSYFESQGIFDNNTVLTDNH
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.7
0.67
0.7
76.7
25.3
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
46.5
-0.2
2
58.36
40.5

Associated Gene:

Gene:
RIPK1
Ensembl Gene ID:
ENSAPLG00000015420
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016085
80331299 - 80351948
20650