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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80357679_80360057_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80357679 - 80360057
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
TCTGTCTGAATG
Flanking Amino Acid:
LTPRGPAASYGTSITSAKIQ
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70.2
35.7
Major BPS
62
0.3
1.4
71.9
41
Major PPT
75.7
0.58
0.7
69.2
31.4
Minor 5ss
31.7
-2.1
3
31.6
42.5
Minor BPS
54.6
0.01
1.6
59.15
43.4

Associated Gene:

Gene:
BPHL
Ensembl Gene ID:
ENSAPLG00000015545
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016204
80357578 - 80373853
16276