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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80366169_80368510_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80366169 - 80368510
Intron Length:
2342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATAT
Flanking Amino Acid:
VTQEDVRIYNGIRDVSKWSE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.6
0.69
0.9
77.4
35.8
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
50.5
0.1
1.7
70.24
40.6

Associated Gene:

Gene:
BPHL
Ensembl Gene ID:
ENSAPLG00000015545
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016204
80357578 - 80373853
16276