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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80368643_80371212_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80368643 - 80371212
Intron Length:
2570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTAACCTTAATT
Flanking Amino Acid:
GISRFAEKSDGNICQELLPL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.8
0.62
0.8
70.8
35.4
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
75.5
0.88
1.2
82.88
37.9

Associated Gene:

Gene:
BPHL
Ensembl Gene ID:
ENSAPLG00000015545
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016204
80357578 - 80373853
16276