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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80371337_80373752_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80371337 - 80373752
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
ACATACTCAATA
Flanking Amino Acid:
EYIQKHIKGSRLLLMPEGKH
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
70.5
0.46
1
74
28.4
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
51.4
0.04
1.7
60.13
39.7

Associated Gene:

Gene:
BPHL
Ensembl Gene ID:
ENSAPLG00000015545
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016204
80357578 - 80373853
16276