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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80395968_80396049_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80395968 - 80396049
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
GCTCTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAC
U12 Branch Point Sequence:
CCCTCGCCAGCC
Flanking Amino Acid:
SLAVAMCSPRDGVPVSTSLL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
42.6
-0.4
1.5
34.5
43.7
Major PPT
68.7
0.42
0.9
61.5
35
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
35.3
-1.1
2.4
42.63
44.5

Associated Gene:

Gene:
PSMG4
Ensembl Gene ID:
ENSAPLG00000023970
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044245
80394620 - 80400055
5436