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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80405925_80409909_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80405925 - 80409909
Intron Length:
3985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
AGGCTCTCACCT
Flanking Amino Acid:
FCAEITPTVIRGGGLGLVLA
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
79.6
0.67
1
72.9
42.2
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
46.4
-0.1
1.8
60.59
42.8

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845