About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80410034_80410836_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80410034 - 80410836
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTGTCTTGACA
Flanking Amino Acid:
IGKYSQLPDSGMSDSVKDKF
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
1
72
38
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
67.4
0.54
1.4
73.38
39

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845