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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80413756_80415588_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80413756 - 80415588
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CCTCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGCAGTT
Flanking Amino Acid:
WKNIVVLCVNSLTGYGIHHC
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
72.3
37.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
75.5
0.57
0.7
68.8
31.7
Minor 5ss
38.8
-1.3
3.3
53.2
38.5
Minor BPS
43.9
-0.3
2.5
73.49
43.5

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845