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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80426467_80428700_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80426467 - 80428700
Intron Length:
2234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCCATCTCTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTGACCCTAACA
Flanking Amino Acid:
CPFLLMLLYWVIFPESLRWL
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
66.5
0.37
1
63.8
37.1
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
60.3
0.32
1.8
70.13
41.5

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845