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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80428870_80475189_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80428870 - 80475189
Intron Length:
46320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGGTCCTGACGC
Flanking Amino Acid:
AGIVLSLYALRIELCPPGHR
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
68.8
43.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
34.8
-1.7
2.8
37.9
40
Minor BPS
45.2
-0.3
2
52.7
44.3

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845