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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80475345_80480336_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80475345 - 80480336
Intron Length:
4992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCTCCTTATTT
Flanking Amino Acid:
GHLITGCIADWVGRRPVLLF
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.3
0.73
0.7
81
29.8
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
68.4
0.66
1.6
79.24
43.6

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845