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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80480441_80495937_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80480441 - 80495937
Intron Length:
15497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TTTGGTTTATCT
Flanking Amino Acid:
AGLVQNVVSKWDLVCDSAWK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
80.8
0.69
0.8
73.5
37.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
53.9
0.2
2.1
79.06
43.7

Associated Gene:

Gene:
SLC22A23
Ensembl Gene ID:
ENSAPLG00000015771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016440
80404567 - 80497411
92845