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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_804851_809374_F

Intron Information:

Intron Rank:
129400
Intron Class:
major
Intron Phase:
Intron Coordinates:
804851 - 809374
Intron Length:
4524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
CCTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
65.9
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.6
0.73
0.7
75.5
32.9
Minor 5ss
42.8
-0.8
2.9
47.2
48.2
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019587
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041589
803471 - 811935
8465