About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80582451_80586418_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80582451 - 80586418
Intron Length:
3968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCT
Flanking Amino Acid:
PSFQSPVKISEIMRSNGFCL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.1
0.52
0.9
68.5
31.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
58.8
0.35
1.8
81.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013227
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013773
80576745 - 80588844
12100