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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80586537_80586778_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80586537 - 80586778
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TACTGGTAAAAT
Flanking Amino Acid:
LKTIINMPWKYSRSEVVLTF
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.5
0.87
0.6
88.4
21.3
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
41
-0.6
2.6
61.76
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013227
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013773
80576745 - 80588844
12100