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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80674961_80688325_R

Intron Information:

Intron Rank:
135890
Intron Class:
major
Intron Phase:
Intron Coordinates:
80674961 - 80688325
Intron Length:
13365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.6
0.8
0.8
80.3
36.7
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
74.6
0.85
1
82.48
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020525
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047520
80674691 - 80689598
14908