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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8068370_8068902_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
8068370 - 8068902
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TCTTTTTTTCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGTCCTTAACA
Flanking Amino Acid:
VFVGINHASAKLDFANNVQL
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.2
-0
1.3
50.1
41.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
95.2
1.52
0.7
94.3
17.7
Minor BPS
90.6
1.27
0.9
91.48
29.8

Associated Gene:

Gene:
INSIG1
Ensembl Gene ID:
ENSAPLG00000007430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007735
8066130 - 8071527
5398