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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80696042_80698909_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80696042 - 80698909
Intron Length:
2868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTGTATTTATTT
Flanking Amino Acid:
AAEPQLLRAPEAEDTNVSEK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
52.4
44.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
29.9
-2.3
3.5
33.9
42.9
Minor BPS
50.6
0.1
1.8
68.02
43.7

Associated Gene:

Gene:
PRPF4B
Ensembl Gene ID:
ENSAPLG00000009869
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010316
80696001 - 80717860
21860