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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80698653_80698909_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80698653 - 80698909
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTGTATTTATTT
Flanking Amino Acid:
MAEDTNVSEK
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
50.6
0.1
1.8
68.02
43.7

Associated Gene:

Gene:
PRPF4B
Ensembl Gene ID:
ENSAPLG00000009869
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039221
80697498 - 80717860
20363