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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80710752_80711890_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80710752 - 80711890
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTACAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTTCTTACAA
Flanking Amino Acid:
QHLCLVFEPLSMNLREVLKK
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
74.3
0.55
0.9
71.4
33
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
61.2
0.35
1.7
71.75
40.6

Associated Gene:

Gene:
PRPF4B
Ensembl Gene ID:
ENSAPLG00000009869
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039221
80697498 - 80717860
20363
ENSAPLT00000010316
80696001 - 80717860
21860