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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80712045_80714475_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80712045 - 80714475
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTAACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTCTAACT
Flanking Amino Acid:
HADIKPDNILVNESKTILKL
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
0.9
77.1
36.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
57.4
0.31
2.1
81.43
40.1

Associated Gene:

Gene:
PRPF4B
Ensembl Gene ID:
ENSAPLG00000009869
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039221
80697498 - 80717860
20363
ENSAPLT00000010316
80696001 - 80717860
21860