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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80742420_80744579_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80742420 - 80744579
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GAACCTGTAATT
Flanking Amino Acid:
RKCMETLKTNWIEISGTKDH
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
71.4
0.48
1
62.3
44.3
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
48.5
-0
2
64.25
40.1

Associated Gene:

Gene:
OTULINL
Ensembl Gene ID:
ENSAPLG00000009753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046047
80741088 - 80756400
15313
ENSAPLT00000044540
80741088 - 80748190
7103
ENSAPLT00000032041
80741088 - 80757211
16124
ENSAPLT00000010172
80739485 - 80759267
19783