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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80744709_80745528_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80744709 - 80745528
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTTAATTAATT
Flanking Amino Acid:
SWMRERDILKLPEKLLYSQG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
60
0.39
1.8
76.67
39.8

Associated Gene:

Gene:
OTULINL
Ensembl Gene ID:
ENSAPLG00000009753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032041
80741088 - 80757211
16124
ENSAPLT00000010172
80739485 - 80759267
19783
ENSAPLT00000046047
80741088 - 80756400
15313
ENSAPLT00000044540
80741088 - 80748190
7103