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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80745679_80747489_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80745679 - 80747489
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTGCTACATT
Flanking Amino Acid:
ETKQAKHMREAYNELFWNCH
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79
0.65
0.8
77.4
36.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
46.8
-0.1
2.4
72.44
45

Associated Gene:

Gene:
OTULINL
Ensembl Gene ID:
ENSAPLG00000009753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044540
80741088 - 80748190
7103
ENSAPLT00000032041
80741088 - 80757211
16124
ENSAPLT00000010172
80739485 - 80759267
19783
ENSAPLT00000046047
80741088 - 80756400
15313