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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80747582_80747678_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
80747582 - 80747678
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAATCTTT
5'SS Class:
weak_major
3'SS Sequence:
AATCTTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTAATCTTGATT
Flanking Amino Acid:
WSDYLQRKLIKNRSVLAEVD
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
74.4
36.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
65.8
0.36
1
63.3
42.3
Minor 5ss
55.6
0.19
2.7
73.9
36.3
Minor BPS
68
0.65
1.2
79.99
35.9

Associated Gene:

Gene:
OTULINL
Ensembl Gene ID:
ENSAPLG00000009753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010172
80739485 - 80759267
19783
ENSAPLT00000046047
80741088 - 80756400
15313
ENSAPLT00000044540
80741088 - 80748190
7103
ENSAPLT00000032041
80741088 - 80757211
16124