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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80747711_80747815_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80747711 - 80747815
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATTT
Flanking Amino Acid:
LYGFLAQLLKRWSDYLQRKL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.1
37.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.5
0.57
1
70.9
43.7
Minor 5ss
45.2
-0.5
3.2
67
44.2
Minor BPS
56.4
0.28
1.8
76.55
40.4

Associated Gene:

Gene:
OTULINL
Ensembl Gene ID:
ENSAPLG00000009753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010172
80739485 - 80759267
19783
ENSAPLT00000046047
80741088 - 80756400
15313
ENSAPLT00000044540
80741088 - 80748190
7103
ENSAPLT00000032041
80741088 - 80757211
16124