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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80787819_80850463_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
80787819 - 80850463
Intron Length:
62645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
AAACAGTATCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCTTGTTTAAAA
Flanking Amino Acid:
SKYIYKSKLFVTVVCES*
Intron Amino Acid Position:
1481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
47.7
-0.1
1.2
38.7
42.7
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
60.6
0.33
1.9
71.99
40.5

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587