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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80788011_80788904_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80788011 - 80788904
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GTTGCACTAACT
Flanking Amino Acid:
MNVGRLQGFDGKIVAQGKLL
Intron Amino Acid Position:
2077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
81.1
0.7
0.8
75.8
32.8
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
54.6
0.22
2.1
79.08
42.4

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172