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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80788983_80789212_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80788983 - 80789212
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGAG
5'SS Class:
major
3'SS Sequence:
TTATCTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTGAACA
Flanking Amino Acid:
KANLDTTELERAVEVMCIVP
Intron Amino Acid Position:
2051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.6
0.51
1
69.7
40.2
Minor 5ss
38.2
-1.3
3.1
48.8
47.4
Minor BPS
74.5
0.76
1.3
81.35
33.5

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172