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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80789944_80790543_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80789944 - 80790543
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTACATCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGTTTTACAT
Flanking Amino Acid:
VSEYIDTFFEDLKQRLGHRL
Intron Amino Acid Position:
2003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.3
0.52
0.9
70.2
35.8
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
54.2
0.21
1.8
75.95
41.3

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172