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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80790634_80792491_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80790634 - 80792491
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ACATTGATAACA
Flanking Amino Acid:
EKLGSLFVKHERRLHMYIVY
Intron Amino Acid Position:
1973

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.1
31.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
35.4
-1.7
3.2
46.1
42.2
Minor BPS
46.3
-0.2
2.2
58.96
40.7

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172