About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80795977_80796732_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80795977 - 80796732
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGACCT
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTCTTCACAATT
Flanking Amino Acid:
ERKSSSLKRRHYVLQELVET
Intron Amino Acid Position:
1892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.1
41.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.5
0.73
0.7
77.6
24.3
Minor 5ss
36.8
-1.5
3.2
55.6
42
Minor BPS
49.6
0.05
1.8
69.49
41.7

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172