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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80796882_80798899_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80796882 - 80798899
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
AATGCCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCTTTCTTGAAT
Flanking Amino Acid:
AIEELVKSKMALEDRPSSLL
Intron Amino Acid Position:
1843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.2
43.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
70.6
0.46
0.9
66.2
39.8
Minor 5ss
29.1
-2.4
3.3
35.3
42.3
Minor BPS
71.3
0.75
1.4
83.63
37.4

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172