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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80804351_80822000_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80804351 - 80822000
Intron Length:
17650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAAATTC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATCTTTAAAA
Flanking Amino Acid:
ALGHYVLSAPHSLSVSSNDA
Intron Amino Acid Position:
1656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
69.3
36.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
43.2
-0.7
3.2
58.4
39.8
Minor BPS
70.6
0.64
1.3
73.34
38.4

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008982
80786655 - 80940826
154172