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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80860053_80860845_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80860053 - 80860845
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGCATC
Flanking Amino Acid:
YVRDLRECMDTYLWEMTSGV
Intron Amino Acid Position:
1255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71.3
0.48
1.1
69.4
41.7
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
49.9
-0
2.2
72.52
38.5

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587
ENSAPLT00000008982
80786655 - 80940826
154172