About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80864834_80867369_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80864834 - 80867369
Intron Length:
2536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
YVVFERSAKQALEWIHDNGE
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
75
0.62
1.1
77.2
36
Major PPT
78
0.63
0.9
77.9
35.6
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587
ENSAPLT00000008982
80786655 - 80940826
154172