Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80867486_80872039_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80867486 - 80872039

Intron Length:

4554

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGGGA

5'SS Class:

major

3'SS Sequence:

GCATTCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTGTCATAACCT

Flanking Amino Acid:

HIKAPEQQVKNILNELFQRE

Intron Amino Acid Position:

1049

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

66.8

38.9

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

77.4

0.62

0.9

73.6

36.8

Minor 5ss

30.3

-2.3

3.5

37.6

41.6

Minor BPS

49.9

0.07

2.2

76.77

45.6

Associated Gene:

Gene:

TRIO

Ensembl Gene ID:

ENSAPLG00000008508

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036922

80787795 - 80950381

162587

ENSAPLT00000008982

80786655 - 80940826

154172