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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80890599_80900133_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80890599 - 80900133
Intron Length:
9535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
SVSFHTHVKELWTWLEELQK
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.4
0.75
0.6
82.1
22.7
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587
ENSAPLT00000008982
80786655 - 80940826
154172