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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80936523_80937171_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80936523 - 80937171
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTCACTAACC
Flanking Amino Acid:
NFGSSKFEFETNMVSLEGLT
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.4
0.8
0.8
84.8
30
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
63.4
0.4
1.9
79.38
34.9

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587
ENSAPLT00000008982
80786655 - 80940826
154172