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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80940781_80947221_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80940781 - 80947221
Intron Length:
6441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGTTTTTGACG
Flanking Amino Acid:
ILKEKVAYLSGGRDKRGGPI
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69.2
38
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
38.6
-1.3
3.6
55.4
48.8
Minor BPS
67.9
0.42
1.3
69.3
38.8

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587