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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80947271_80950372_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
80947271 - 80950372
Intron Length:
3102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATGAAATGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTCGCAAAAAT
Flanking Amino Acid:
MAQAMEVLPILKE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
49.7
-0
1.2
47.5
43.2
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
44.7
-0.3
2.3
71.83
44.4

Associated Gene:

Gene:
TRIO
Ensembl Gene ID:
ENSAPLG00000008508
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036922
80787795 - 80950381
162587