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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_809602_810905_F

Intron Information:

Intron Rank:
129401
Intron Class:
major
Intron Phase:
Intron Coordinates:
809602 - 810905
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AAATGTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCCATCTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
71.7
0.49
1
66.8
43.9
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
49
0
1.8
64.95
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019587
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041589
803471 - 811935
8465