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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81099541_81100444_F

Intron Information:

Intron Rank:
148766
Intron Class:
major
Intron Phase:
Intron Coordinates:
81099541 - 81100444
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATCAATCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.3
0.59
0.9
73.8
41.4
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
48.8
-0
1.9
68.91
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039998
81099456 - 81101666
2211