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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81153876_81155439_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81153876 - 81155439
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGC
5'SS Class:
major
3'SS Sequence:
TTTCTAACTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCCTTTCTAACT
Flanking Amino Acid:
KHAEVQTLANRMNTGLEKLK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.8
40
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.3
0.68
0.9
71.5
38.4
Minor 5ss
42.5
-0.8
3.2
58.8
46.1
Minor BPS
60.1
0.4
1.7
75.41
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040534
81153470 - 81170005
16536