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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81155555_81155821_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81155555 - 81155821
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTTGAATA
Flanking Amino Acid:
LQIANEKADMVLKEVTVKAQ
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
75.1
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.1
0.65
0.8
71.1
39.6
Minor 5ss
42.2
-0.9
2.4
48.9
42.2
Minor BPS
76.2
0.82
1.3
84.09
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040534
81153470 - 81170005
16536