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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81155999_81166150_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81155999 - 81166150
Intron Length:
10152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
ATAGTACAAACT
Flanking Amino Acid:
ALEEAEAALQQFPKDTINEE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
41.3
-0.5
2.1
60.68
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040534
81153470 - 81170005
16536