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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81167409_81168054_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81167409 - 81168054
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGGTTTTATCT
Flanking Amino Acid:
EYEKAMREKQTLLEDAERCR
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
79.9
27.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
73.2
0.52
1
66.6
44.3
Minor 5ss
30.2
-2.3
3.3
39.9
46.1
Minor BPS
52.7
0.16
1.7
69
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040534
81153470 - 81170005
16536