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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81168191_81169661_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81168191 - 81169661
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
EFAVQTKRLVGDVLLATAFL
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040534
81153470 - 81170005
16536