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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_81181291_81182930_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81181291 - 81182930
Intron Length:
1640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAGAC
5'SS Class:
major
3'SS Sequence:
TGTTTTGAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTGTTTTGAACT
Flanking Amino Acid:
RKLLHQTMAHGGWALLQNCH
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
32
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
65.3
0.34
1.1
60
45.1
Minor 5ss
33.2
-1.9
3.5
46.2
42.5
Minor BPS
63.4
0.5
1.4
75.75
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048059
81178698 - 81195718
17021